SNPeBoT - Predicting effects of SNPs on TF binding

Provide a Job label:?

Select an input format:

Sequence ?
VCF ?
RSID ?

Example Formatting:

CAAAATCCTTAGAGTGGGTCTCTCCCTGTCTCCTGCCTCATAGGTTATTTA    CAAAATCCTTAGAGTGGGTCTCTCCCTGTCTCCTGCCTCATAGGTTATTTA

chr1    35325526    SNP_1    G    A

rs17034687

Select a prediction mode:

Predict effect of SNP on given TF binding ?
Scan SNP for TF match and predict effect on binding ?
Clear Example

Transcription Factor:

ARNT ASCL1 ATF1 ATF2 ATF3 ATF4 ATOH1 BCL6 CDX2 CEBPA CEBPB CEBPG CLOCK CREB1 CREM CUX1 E2F1 E2F6 E2F7 EGR1 EGR2 ELF1 ELF3 ELK1 ERG ESR1 ESR2 ETS1 ETV1 ETV5 FLI1 FOSL1 FOSL2 FOXA1 FOXA2 FOXA3 FOXO1 FOXP1 GABPA GATA1 GATA2 GATA3 GATA4 GATA6 HIC1 HLF HNF1A HNF4A HNF4G HSF1 IRF1 IRF4 JUN JUNB JUND KLF1 KLF5 KLF8 KLF9 LEF1 MAFF MAFG MAFK MAX MEIS2 MITF MYB MYOD1 MZF1 NANOG NFE2 NR1H3 NR1H4 NR2C1 NR2C2 OLIG2 OSR2 OTX2 PAX5 PBX1 PBX2 PBX3 PPARG RARA RFX1 RFX2 RFX5 RUNX1 RUNX2 RUNX3 RXRA RXRB SIX2 SMAD2 SMAD3 SNAI2 SOX17 SOX2 SOX5 SP1 SP3 SPI1 SPIB SRF TCF7 TFAP4 TFE3 USF1 USF2 VDR VEZF1 WT1 ZFX

Transcription Factor Range for Scan:

ARNT-ETV5 FLI1-KLF9 LEF1-OTX2 PAX5-SRF TCF7-ZFX

p-value:

0.5 0.05 0.005 0.001 0.0005 0.0001 Submit

SNP ID	Sequence	AltSequence	Prediction	Transcription Factor